Single nucleotide variant rs199443

Genomic position: 17:

Allele info and frequencies

Click here to go to dbSNP for more information.

This SNP has no significant association with diseases nor in high LD with index SNPs.

Click here to find this SNP in GTEx database.

Gene Level

Click gene id to go to that gene. Cilck table header to sort by that attribute.

Gene ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENSG00000214401 Cerebellum cis-eQTL 545476 0.000000158133 1.12023 Display eQTL plot
From Cerebellum cis-eQTL Distance: 545476 Pvalue: 0.000000158133 Beta: 1.12023 Display eQTL plot
ENSG00000262500 Cerebellum cis-eQTL 497155 0.0000000332304 1.16561 Display eQTL plot
From Cerebellum cis-eQTL Distance: 497155 Pvalue: 0.0000000332304 Beta: 1.16561 Display eQTL plot
ENSG00000262539 Cerebellum cis-eQTL -481593 0.0000000381179 1.16178 Display eQTL plot
From Cerebellum cis-eQTL Distance: -481593 Pvalue: 0.0000000381179 Beta: 1.16178 Display eQTL plot
ENSG00000176681 Cerebellum cis-eQTL 404405 0.00000000646592 1.20908 Display eQTL plot
From Cerebellum cis-eQTL Distance: 404405 Pvalue: 0.00000000646592 Beta: 1.20908 Display eQTL plot
ENSG00000238083 Cerebellum cis-eQTL 186549 0.00000000653673 1.20881 Display eQTL plot
From Cerebellum cis-eQTL Distance: 186549 Pvalue: 0.00000000653673 Beta: 1.20881 Display eQTL plot
ENSG00000185829 Cerebellum cis-eQTL -162517 0.00000014854 1.12214 Display eQTL plot
From Cerebellum cis-eQTL Distance: -162517 Pvalue: 0.00000014854 Beta: 1.12214 Display eQTL plot
ENSG00000262633 Cerebellum cis-eQTL -180934 0.0000000774674 -1.14151 Display eQTL plot
From Cerebellum cis-eQTL Distance: -180934 Pvalue: 0.0000000774674 Beta: -1.14151 Display eQTL plot
ENSG00000214425 Cerebellum trans-eQTL -1191864 0.0000000140015 -0.663264 Display eQTL plot
From Cerebellum trans-eQTL -1191864 Pvalue: 0.0000000140015 Beta: -0.663264 Display eQTL plot
ENSG00000285668 Cerebellum trans-eQTL -1153820 0.000000000319351 0.713765 Display eQTL plot
From Cerebellum trans-eQTL -1153820 Pvalue: 0.000000000319351 Beta: 0.713765 Display eQTL plot
ENSG00000263503 Cerebellum trans-eQTL -1139859 0.000000016618 0.660722 Display eQTL plot
From Cerebellum trans-eQTL -1139859 Pvalue: 0.000000016618 Beta: 0.660722 Display eQTL plot
ENSG00000262500 Hippocampus cis-eQTL 497155 0.000000031343 1.16724 Display eQTL plot
From Hippocampus cis-eQTL Distance: 497155 Pvalue: 0.000000031343 Beta: 1.16724 Display eQTL plot
ENSG00000262539 Hippocampus cis-eQTL -481593 0.0000000078779 1.20404 Display eQTL plot
From Hippocampus cis-eQTL Distance: -481593 Pvalue: 0.0000000078779 Beta: 1.20404 Display eQTL plot
ENSG00000263503 Hippocampus trans-eQTL -1139859 0.00000000896484 0.669767 Display eQTL plot
From Hippocampus trans-eQTL -1139859 Pvalue: 0.00000000896484 Beta: 0.669767 Display eQTL plot
ENSG00000214401 Orbitofrontal Cortex cis-eQTL 545476 0.00000000679279 1.21677 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 545476 Pvalue: 0.00000000679279 Beta: 1.21677 Display eQTL plot
ENSG00000238083 Orbitofrontal Cortex cis-eQTL 186549 0.000000000238229 1.29542 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 186549 Pvalue: 0.000000000238229 Beta: 1.29542 Display eQTL plot
ENSG00000263503 Orbitofrontal Cortex trans-eQTL -1139859 0.0000000153391 0.661913 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL -1139859 Pvalue: 0.0000000153391 Beta: 0.661913 Display eQTL plot
ENSG00000214401 Prefrontal Cortex cis-eQTL 545476 0.0000000143068 1.19082 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 545476 Pvalue: 0.0000000143068 Beta: 1.19082 Display eQTL plot
ENSG00000262539 Prefrontal Cortex cis-eQTL -481593 0.000000121129 1.13082 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -481593 Pvalue: 0.000000121129 Beta: 1.13082 Display eQTL plot
ENSG00000176681 Prefrontal Cortex cis-eQTL 404405 0.000000345328 1.0985 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 404405 Pvalue: 0.000000345328 Beta: 1.0985 Display eQTL plot
ENSG00000238083 Prefrontal Cortex cis-eQTL 186549 0.0000000117639 1.19596 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 186549 Pvalue: 0.0000000117639 Beta: 1.19596 Display eQTL plot
ENSG00000263503 Prefrontal Cortex trans-eQTL -1139859 0.0000000116903 0.670364 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1139859 Pvalue: 0.0000000116903 Beta: 0.670364 Display eQTL plot

Transcript Level

Click on transcript id to go to that transcript. Cilck table header to sort by that attribute.

Transcript ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENST00000639356 Cerebellum cis-eQTL -516832 0.000000000825892 1.25851 Display eQTL plot
From Cerebellum cis-eQTL Distance: -516832 Pvalue: 0.000000000825892 Beta: 1.25851 Display eQTL plot
ENST00000398275 Cerebellum cis-eQTL 545478 0.0000000413758 1.15948 Display eQTL plot
From Cerebellum cis-eQTL Distance: 545478 Pvalue: 0.0000000413758 Beta: 1.15948 Display eQTL plot
ENST00000574657 Cerebellum cis-eQTL 497155 0.00000000208034 1.23699 Display eQTL plot
From Cerebellum cis-eQTL Distance: 497155 Pvalue: 0.00000000208034 Beta: 1.23699 Display eQTL plot
ENST00000571422 Cerebellum cis-eQTL -481593 0.00000000656397 1.2087 Display eQTL plot
From Cerebellum cis-eQTL Distance: -481593 Pvalue: 0.00000000656397 Beta: 1.2087 Display eQTL plot
ENST00000496930 Cerebellum cis-eQTL 404407 0.00000000212641 1.23647 Display eQTL plot
From Cerebellum cis-eQTL Distance: 404407 Pvalue: 0.00000000212641 Beta: 1.23647 Display eQTL plot
ENST00000572638 Cerebellum cis-eQTL 186556 0.000000000158134 1.29454 Display eQTL plot
From Cerebellum cis-eQTL Distance: 186556 Pvalue: 0.000000000158134 Beta: 1.29454 Display eQTL plot
ENST00000336125 Cerebellum cis-eQTL -162517 0.0000000845509 1.13895 Display eQTL plot
From Cerebellum cis-eQTL Distance: -162517 Pvalue: 0.0000000845509 Beta: 1.13895 Display eQTL plot
ENST00000579913 Cerebellum trans-eQTL -1227043 0.0000000154993 -0.661759 Display eQTL plot
From Cerebellum trans-eQTL -1227043 Pvalue: 0.0000000154993 Beta: -0.661759 Display eQTL plot
ENST00000650501 Cerebellum trans-eQTL -1153820 0.0000000000429826 0.736804 Display eQTL plot
From Cerebellum trans-eQTL -1153820 Pvalue: 0.0000000000429826 Beta: 0.736804 Display eQTL plot
ENST00000574657 Hippocampus cis-eQTL 497155 0.0000000259269 1.17246 Display eQTL plot
From Hippocampus cis-eQTL Distance: 497155 Pvalue: 0.0000000259269 Beta: 1.17246 Display eQTL plot
ENST00000571422 Hippocampus cis-eQTL -481593 0.000000000829646 1.25841 Display eQTL plot
From Hippocampus cis-eQTL Distance: -481593 Pvalue: 0.000000000829646 Beta: 1.25841 Display eQTL plot
ENST00000580257 Hippocampus trans-eQTL -1139859 0.00000000330449 0.683762 Display eQTL plot
From Hippocampus trans-eQTL -1139859 Pvalue: 0.00000000330449 Beta: 0.683762 Display eQTL plot
ENST00000639356 Orbitofrontal Cortex cis-eQTL -516832 0.00000000534911 1.22286 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: -516832 Pvalue: 0.00000000534911 Beta: 1.22286 Display eQTL plot
ENST00000398275 Orbitofrontal Cortex cis-eQTL 545478 0.000000022648 1.18486 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 545478 Pvalue: 0.000000022648 Beta: 1.18486 Display eQTL plot
ENST00000333412 Orbitofrontal Cortex cis-eQTL 186549 0.000000000388932 1.28475 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 186549 Pvalue: 0.000000000388932 Beta: 1.28475 Display eQTL plot
ENST00000572638 Orbitofrontal Cortex cis-eQTL 186556 0.000000000602824 1.27498 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 186556 Pvalue: 0.000000000602824 Beta: 1.27498 Display eQTL plot
ENST00000580257 Orbitofrontal Cortex trans-eQTL -1139859 0.00000000174692 0.692315 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL -1139859 Pvalue: 0.00000000174692 Beta: 0.692315 Display eQTL plot
ENST00000649665 Prefrontal Cortex cis-eQTL -846519 0.000000324993 1.10043 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -846519 Pvalue: 0.000000324993 Beta: 1.10043 Display eQTL plot
ENST00000639356 Prefrontal Cortex cis-eQTL -516832 0.00000000000948118 1.35086 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -516832 Pvalue: 0.00000000000948118 Beta: 1.35086 Display eQTL plot
ENST00000398275 Prefrontal Cortex cis-eQTL 545478 0.00000000010481 1.3048 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 545478 Pvalue: 0.00000000010481 Beta: 1.3048 Display eQTL plot
ENST00000571422 Prefrontal Cortex cis-eQTL -481593 0.00000000509053 1.21734 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -481593 Pvalue: 0.00000000509053 Beta: 1.21734 Display eQTL plot
ENST00000572638 Prefrontal Cortex cis-eQTL 186556 0.0000000000646614 1.31451 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 186556 Pvalue: 0.0000000000646614 Beta: 1.31451 Display eQTL plot
ENST00000579913 Prefrontal Cortex trans-eQTL -1227043 0.00000000340473 -0.687811 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1227043 Pvalue: 0.00000000340473 Beta: -0.687811 Display eQTL plot
ENST00000581296 Prefrontal Cortex trans-eQTL -1191864 0.0000000101024 -0.672492 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1191864 Pvalue: 0.0000000101024 Beta: -0.672492 Display eQTL plot
ENST00000650501 Prefrontal Cortex trans-eQTL -1153820 0.0000000000812664 0.734155 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1153820 Pvalue: 0.0000000000812664 Beta: 0.734155 Display eQTL plot
ENST00000580257 Prefrontal Cortex trans-eQTL -1139859 0.0000000147599 0.666931 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1139859 Pvalue: 0.0000000147599 Beta: 0.666931 Display eQTL plot
ENST00000583740 Prefrontal Cortex trans-eQTL -1111594 0.0000000000110416 0.755539 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1111594 Pvalue: 0.0000000000110416 Beta: 0.755539 Display eQTL plot

This SNP has no significant association with any pathology marker.