Single nucleotide variant rs2856553

Genomic position: 16:

Allele info and frequencies

Click here to go to dbSNP for more information.

This SNP has no significant association with diseases nor in high LD with index SNPs.

Click here to find this SNP in GTEx database.

Gene Level

Click gene id to go to that gene. Cilck table header to sort by that attribute.

Gene ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENSG00000244257 Cerebellum cis-eQTL -51032 0.00000000205265 -1.30466 Display eQTL plot
From Cerebellum cis-eQTL Distance: -51032 Pvalue: 0.00000000205265 Beta: -1.30466 Display eQTL plot
ENSG00000227827 Cerebellum cis-eQTL -96915 0.0000000164357 1.24929 Display eQTL plot
From Cerebellum cis-eQTL Distance: -96915 Pvalue: 0.0000000164357 Beta: 1.24929 Display eQTL plot
ENSG00000285628 Cerebellum trans-eQTL 2058699 0.00000000899269 0.669722 Display eQTL plot
From Cerebellum trans-eQTL 2058699 Pvalue: 0.00000000899269 Beta: 0.669722 Display eQTL plot
ENSG00000254681 Cerebellum trans-eQTL 2115212 0.000000000840351 0.701785 Display eQTL plot
From Cerebellum trans-eQTL 2115212 Pvalue: 0.000000000840351 Beta: 0.701785 Display eQTL plot
ENSG00000227827 Hippocampus cis-eQTL -96915 0.0000000715067 1.2061 Display eQTL plot
From Hippocampus cis-eQTL Distance: -96915 Pvalue: 0.0000000715067 Beta: 1.2061 Display eQTL plot
ENSG00000244257 Orbitofrontal Cortex cis-eQTL -51032 0.0000000369256 -1.22596 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: -51032 Pvalue: 0.0000000369256 Beta: -1.22596 Display eQTL plot
ENSG00000254681 Orbitofrontal Cortex trans-eQTL 2115212 0.0000000161555 0.661142 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL 2115212 Pvalue: 0.0000000161555 Beta: 0.661142 Display eQTL plot
ENSG00000244257 Prefrontal Cortex cis-eQTL -51032 0.000000000437514 -1.34526 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -51032 Pvalue: 0.000000000437514 Beta: -1.34526 Display eQTL plot
ENSG00000235020 Prefrontal Cortex trans-eQTL Distance not available. 0.0000000238395 -0.659727 Display eQTL plot
From Prefrontal Cortex trans-eQTL Distance not available. Pvalue: 0.0000000238395 Beta: -0.659727 Display eQTL plot
ENSG00000254681 Prefrontal Cortex trans-eQTL 2115212 0.000000000812124 0.706671 Display eQTL plot
From Prefrontal Cortex trans-eQTL 2115212 Pvalue: 0.000000000812124 Beta: 0.706671 Display eQTL plot

Transcript Level

Click on transcript id to go to that transcript. Cilck table header to sort by that attribute.

Transcript ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENST00000574894 Cerebellum cis-eQTL -14532 0.000000020072 1.24363 Display eQTL plot
From Cerebellum cis-eQTL Distance: -14532 Pvalue: 0.000000020072 Beta: 1.24363 Display eQTL plot
ENST00000458669 Cerebellum cis-eQTL -51032 0.0000000000705852 -1.38243 Display eQTL plot
From Cerebellum cis-eQTL Distance: -51032 Pvalue: 0.0000000000705852 Beta: -1.38243 Display eQTL plot
ENST00000532739 Cerebellum cis-eQTL -96915 0.0000000111369 1.26013 Display eQTL plot
From Cerebellum cis-eQTL Distance: -96915 Pvalue: 0.0000000111369 Beta: 1.26013 Display eQTL plot
ENST00000648391 Cerebellum trans-eQTL 2058699 0.0000000000572449 0.733652 Display eQTL plot
From Cerebellum trans-eQTL 2058699 Pvalue: 0.0000000000572449 Beta: 0.733652 Display eQTL plot
ENST00000532415 Cerebellum trans-eQTL 2115212 0.000000000162734 0.72177 Display eQTL plot
From Cerebellum trans-eQTL 2115212 Pvalue: 0.000000000162734 Beta: 0.72177 Display eQTL plot
ENST00000532739 Hippocampus cis-eQTL -96915 0.0000000309102 1.23118 Display eQTL plot
From Hippocampus cis-eQTL Distance: -96915 Pvalue: 0.0000000309102 Beta: 1.23118 Display eQTL plot
ENST00000532415 Orbitofrontal Cortex trans-eQTL 2115212 0.0000000106682 0.667249 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL 2115212 Pvalue: 0.0000000106682 Beta: 0.667249 Display eQTL plot
ENST00000458669 Prefrontal Cortex cis-eQTL -51032 0.000000000103012 -1.37744 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -51032 Pvalue: 0.000000000103012 Beta: -1.37744 Display eQTL plot
ENST00000532739 Prefrontal Cortex cis-eQTL -96915 0.000000140106 1.18884 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -96915 Pvalue: 0.000000140106 Beta: 1.18884 Display eQTL plot
ENST00000532415 Prefrontal Cortex trans-eQTL 2115212 0.0000000000687277 0.736033 Display eQTL plot
From Prefrontal Cortex trans-eQTL 2115212 Pvalue: 0.0000000000687277 Beta: 0.736033 Display eQTL plot
ENST00000538166 Prefrontal Cortex trans-eQTL 2124162 0.00000000000331265 0.767464 Display eQTL plot
From Prefrontal Cortex trans-eQTL 2124162 Pvalue: 0.00000000000331265 Beta: 0.767464 Display eQTL plot

This SNP has no significant association with any pathology marker.