Single nucleotide variant rs12239844

Genomic position: 1:

Allele info and frequencies

Click here to go to dbSNP for more information.

This SNP has no significant association with diseases nor in high LD with index SNPs.

Click here to find this SNP in GTEx database.

Gene Level

Click gene id to go to that gene. Cilck table header to sort by that attribute.

Gene ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENSG00000084072 Hippocampus cis-eQTL 0 0.0000000154236 0.908901 Display eQTL plot
From Hippocampus cis-eQTL Distance: 0 Pvalue: 0.0000000154236 Beta: 0.908901 Display eQTL plot
ENSG00000084072 Prefrontal Cortex cis-eQTL 0 0.0000000000687047 1.01222 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 0 Pvalue: 0.0000000000687047 Beta: 1.01222 Display eQTL plot

Transcript Level

Click on transcript id to go to that transcript. Cilck table header to sort by that attribute.

Transcript ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENST00000495526 Cerebellum cis-eQTL 0 0.000000006239 0.9269 Display eQTL plot
From Cerebellum cis-eQTL Distance: 0 Pvalue: 0.000000006239 Beta: 0.9269 Display eQTL plot
ENST00000495526 Hippocampus cis-eQTL 0 0.000000000073767 1.00365 Display eQTL plot
From Hippocampus cis-eQTL Distance: 0 Pvalue: 0.000000000073767 Beta: 1.00365 Display eQTL plot
ENST00000495526 Prefrontal Cortex cis-eQTL 0 0.000000000027991 1.0257 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 0 Pvalue: 0.000000000027991 Beta: 1.0257 Display eQTL plot
ENST00000372830 Prefrontal Cortex cis-eQTL 0 0.000000286 0.851265 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 0 Pvalue: 0.000000286 Beta: 0.851265 Display eQTL plot

This SNP has no significant association with any pathology marker.