Single nucleotide variant rs199525

Genomic position: 17:

Allele info and frequencies

Click here to go to dbSNP for more information.

This SNP has no significant association with diseases nor in high LD with index SNPs.

Click here to find this SNP in GTEx database.

Gene Level

Click gene id to go to that gene. Cilck table header to sort by that attribute.

Gene ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENSG00000214401 Cerebellum cis-eQTL 573745 0.000000104825 1.15072 Display eQTL plot
From Cerebellum cis-eQTL Distance: 573745 Pvalue: 0.000000104825 Beta: 1.15072 Display eQTL plot
ENSG00000262500 Cerebellum cis-eQTL 525424 0.000000462446 1.10386 Display eQTL plot
From Cerebellum cis-eQTL Distance: 525424 Pvalue: 0.000000462446 Beta: 1.10386 Display eQTL plot
ENSG00000262539 Cerebellum cis-eQTL -509862 0.0000000402514 1.17882 Display eQTL plot
From Cerebellum cis-eQTL Distance: -509862 Pvalue: 0.0000000402514 Beta: 1.17882 Display eQTL plot
ENSG00000176681 Cerebellum cis-eQTL 432674 0.0000000120333 1.21214 Display eQTL plot
From Cerebellum cis-eQTL Distance: 432674 Pvalue: 0.0000000120333 Beta: 1.21214 Display eQTL plot
ENSG00000238083 Cerebellum cis-eQTL 214818 0.0000000134485 1.20917 Display eQTL plot
From Cerebellum cis-eQTL Distance: 214818 Pvalue: 0.0000000134485 Beta: 1.20917 Display eQTL plot
ENSG00000262633 Cerebellum cis-eQTL -152665 0.0000000833202 -1.15761 Display eQTL plot
From Cerebellum cis-eQTL Distance: -152665 Pvalue: 0.0000000833202 Beta: -1.15761 Display eQTL plot
ENSG00000285668 Cerebellum trans-eQTL -1182089 0.0000000000487776 0.735418 Display eQTL plot
From Cerebellum trans-eQTL -1182089 Pvalue: 0.0000000000487776 Beta: 0.735418 Display eQTL plot
ENSG00000262500 Hippocampus cis-eQTL 525424 0.0000000362531 1.1818 Display eQTL plot
From Hippocampus cis-eQTL Distance: 525424 Pvalue: 0.0000000362531 Beta: 1.1818 Display eQTL plot
ENSG00000262539 Hippocampus cis-eQTL -509862 0.0000000399299 1.17905 Display eQTL plot
From Hippocampus cis-eQTL Distance: -509862 Pvalue: 0.0000000399299 Beta: 1.17905 Display eQTL plot
ENSG00000214401 Orbitofrontal Cortex cis-eQTL 573745 0.00000000316337 1.2465 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 573745 Pvalue: 0.00000000316337 Beta: 1.2465 Display eQTL plot
ENSG00000238083 Orbitofrontal Cortex cis-eQTL 214818 0.000000000306545 1.30097 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 214818 Pvalue: 0.000000000306545 Beta: 1.30097 Display eQTL plot
ENSG00000263503 Orbitofrontal Cortex trans-eQTL -1168128 0.0000000176085 0.659857 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL -1168128 Pvalue: 0.0000000176085 Beta: 0.659857 Display eQTL plot
ENSG00000214401 Prefrontal Cortex cis-eQTL 573745 0.000000064509 1.16697 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 573745 Pvalue: 0.000000064509 Beta: 1.16697 Display eQTL plot
ENSG00000262539 Prefrontal Cortex cis-eQTL -509862 0.000000227893 1.12866 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -509862 Pvalue: 0.000000227893 Beta: 1.12866 Display eQTL plot
ENSG00000238083 Prefrontal Cortex cis-eQTL 214818 0.0000000931628 1.15611 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 214818 Pvalue: 0.0000000931628 Beta: 1.15611 Display eQTL plot
ENSG00000263503 Prefrontal Cortex trans-eQTL -1168128 0.000000026548 0.658083 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1168128 Pvalue: 0.000000026548 Beta: 0.658083 Display eQTL plot

Transcript Level

Click on transcript id to go to that transcript. Cilck table header to sort by that attribute.

Transcript ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENST00000639356 Cerebellum cis-eQTL -545101 0.000000000165308 1.31432 Display eQTL plot
From Cerebellum cis-eQTL Distance: -545101 Pvalue: 0.000000000165308 Beta: 1.31432 Display eQTL plot
ENST00000398275 Cerebellum cis-eQTL 573747 0.0000000192674 1.19942 Display eQTL plot
From Cerebellum cis-eQTL Distance: 573747 Pvalue: 0.0000000192674 Beta: 1.19942 Display eQTL plot
ENST00000574657 Cerebellum cis-eQTL 525424 0.0000000310531 1.18617 Display eQTL plot
From Cerebellum cis-eQTL Distance: 525424 Pvalue: 0.0000000310531 Beta: 1.18617 Display eQTL plot
ENST00000571422 Cerebellum cis-eQTL -509862 0.0000000122464 1.21167 Display eQTL plot
From Cerebellum cis-eQTL Distance: -509862 Pvalue: 0.0000000122464 Beta: 1.21167 Display eQTL plot
ENST00000496930 Cerebellum cis-eQTL 432676 0.00000000725759 1.22544 Display eQTL plot
From Cerebellum cis-eQTL Distance: 432676 Pvalue: 0.00000000725759 Beta: 1.22544 Display eQTL plot
ENST00000572638 Cerebellum cis-eQTL 214825 0.000000000819724 1.27882 Display eQTL plot
From Cerebellum cis-eQTL Distance: 214825 Pvalue: 0.000000000819724 Beta: 1.27882 Display eQTL plot
ENST00000579913 Cerebellum trans-eQTL -1255312 0.0000000283928 -0.652614 Display eQTL plot
From Cerebellum trans-eQTL -1255312 Pvalue: 0.0000000283928 Beta: -0.652614 Display eQTL plot
ENST00000650501 Cerebellum trans-eQTL -1182089 0.0000000000123972 0.749982 Display eQTL plot
From Cerebellum trans-eQTL -1182089 Pvalue: 0.0000000000123972 Beta: 0.749982 Display eQTL plot
ENST00000571422 Hippocampus cis-eQTL -509862 0.0000000194989 1.19909 Display eQTL plot
From Hippocampus cis-eQTL Distance: -509862 Pvalue: 0.0000000194989 Beta: 1.19909 Display eQTL plot
ENST00000639356 Orbitofrontal Cortex cis-eQTL -545101 0.0000000160619 1.20438 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: -545101 Pvalue: 0.0000000160619 Beta: 1.20438 Display eQTL plot
ENST00000398275 Orbitofrontal Cortex cis-eQTL 573747 0.0000000148866 1.20643 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 573747 Pvalue: 0.0000000148866 Beta: 1.20643 Display eQTL plot
ENST00000333412 Orbitofrontal Cortex cis-eQTL 214818 0.000000000352545 1.29789 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 214818 Pvalue: 0.000000000352545 Beta: 1.29789 Display eQTL plot
ENST00000572638 Orbitofrontal Cortex cis-eQTL 214825 0.00000000493062 1.23536 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 214825 Pvalue: 0.00000000493062 Beta: 1.23536 Display eQTL plot
ENST00000580257 Orbitofrontal Cortex trans-eQTL -1168128 0.0000000152911 0.661959 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL -1168128 Pvalue: 0.0000000152911 Beta: 0.661959 Display eQTL plot
ENST00000639356 Prefrontal Cortex cis-eQTL -545101 0.000000000176521 1.31396 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -545101 Pvalue: 0.000000000176521 Beta: 1.31396 Display eQTL plot
ENST00000398275 Prefrontal Cortex cis-eQTL 573747 0.00000000256335 1.2531 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 573747 Pvalue: 0.00000000256335 Beta: 1.2531 Display eQTL plot
ENST00000571422 Prefrontal Cortex cis-eQTL -509862 0.0000000235393 1.19559 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -509862 Pvalue: 0.0000000235393 Beta: 1.19559 Display eQTL plot
ENST00000572638 Prefrontal Cortex cis-eQTL 214825 0.00000000502254 1.2364 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 214825 Pvalue: 0.00000000502254 Beta: 1.2364 Display eQTL plot
ENST00000579913 Prefrontal Cortex trans-eQTL -1255312 0.0000000062356 -0.679401 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1255312 Pvalue: 0.0000000062356 Beta: -0.679401 Display eQTL plot
ENST00000650501 Prefrontal Cortex trans-eQTL -1182089 0.000000000270479 0.720203 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1182089 Pvalue: 0.000000000270479 Beta: 0.720203 Display eQTL plot
ENST00000583740 Prefrontal Cortex trans-eQTL -1139863 0.00000000121083 0.701559 Display eQTL plot
From Prefrontal Cortex trans-eQTL -1139863 Pvalue: 0.00000000121083 Beta: 0.701559 Display eQTL plot

This SNP has no significant association with any pathology marker.