Single nucleotide variant rs2249563

Genomic position: 4:

Allele info and frequencies

Click here to go to dbSNP for more information.

This SNP has no significant association with diseases nor in high LD with index SNPs.

Click here to find this SNP in GTEx database.

Gene Level

Click gene id to go to that gene. Cilck table header to sort by that attribute.

Gene ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENSG00000163682 Cerebellum cis-eQTL 0 0.00000000163704 -1.15323 Display eQTL plot
From Cerebellum cis-eQTL Distance: 0 Pvalue: 0.00000000163704 Beta: -1.15323 Display eQTL plot
ENSG00000237550 Cerebellum trans-eQTL Distance not available. 0.0000000000600618 0.733119 Display eQTL plot
From Cerebellum trans-eQTL Distance not available. Pvalue: 0.0000000000600618 Beta: 0.733119 Display eQTL plot
ENSG00000163682 Hippocampus cis-eQTL 0 0.0000000000245659 -1.23585 Display eQTL plot
From Hippocampus cis-eQTL Distance: 0 Pvalue: 0.0000000000245659 Beta: -1.23585 Display eQTL plot
ENSG00000237550 Hippocampus trans-eQTL Distance not available. 0.0000000000517385 0.734769 Display eQTL plot
From Hippocampus trans-eQTL Distance not available. Pvalue: 0.0000000000517385 Beta: 0.734769 Display eQTL plot
ENSG00000163682 Orbitofrontal Cortex cis-eQTL 0 0.00000000000309839 -1.2707 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 0 Pvalue: 0.00000000000309839 Beta: -1.2707 Display eQTL plot
ENSG00000237550 Orbitofrontal Cortex trans-eQTL Distance not available. 0.00000000000333429 0.763071 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL Distance not available. Pvalue: 0.00000000000333429 Beta: 0.763071 Display eQTL plot
ENSG00000163682 Prefrontal Cortex cis-eQTL 0 0.0000000000750288 -1.21968 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 0 Pvalue: 0.0000000000750288 Beta: -1.21968 Display eQTL plot
ENSG00000237550 Prefrontal Cortex trans-eQTL Distance not available. 0.00000000000323299 0.767698 Display eQTL plot
From Prefrontal Cortex trans-eQTL Distance not available. Pvalue: 0.00000000000323299 Beta: 0.767698 Display eQTL plot

Transcript Level

Click on transcript id to go to that transcript. Cilck table header to sort by that attribute.

Transcript ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENST00000295955 Cerebellum cis-eQTL 366 0.0000000000036617 -1.26801 Display eQTL plot
From Cerebellum cis-eQTL Distance: 366 Pvalue: 0.0000000000036617 Beta: -1.26801 Display eQTL plot
ENST00000506581 Cerebellum cis-eQTL 381 0.000000000109992 1.20834 Display eQTL plot
From Cerebellum cis-eQTL Distance: 381 Pvalue: 0.000000000109992 Beta: 1.20834 Display eQTL plot
ENST00000418824 Cerebellum trans-eQTL Distance not available. 0.0000000055036 0.676704 Display eQTL plot
From Cerebellum trans-eQTL Distance not available. Pvalue: 0.0000000055036 Beta: 0.676704 Display eQTL plot
ENST00000466501 Cerebellum trans-eQTL Distance not available. 0.0000000000151541 0.747908 Display eQTL plot
From Cerebellum trans-eQTL Distance not available. Pvalue: 0.0000000000151541 Beta: 0.747908 Display eQTL plot
ENST00000295955 Hippocampus cis-eQTL 366 0.000000029706 -1.0846 Display eQTL plot
From Hippocampus cis-eQTL Distance: 366 Pvalue: 0.000000029706 Beta: -1.0846 Display eQTL plot
ENST00000508595 Hippocampus cis-eQTL 379 0.00000000667827 -1.12129 Display eQTL plot
From Hippocampus cis-eQTL Distance: 379 Pvalue: 0.00000000667827 Beta: -1.12129 Display eQTL plot
ENST00000506581 Hippocampus cis-eQTL 381 0.000000000392744 1.18331 Display eQTL plot
From Hippocampus cis-eQTL Distance: 381 Pvalue: 0.000000000392744 Beta: 1.18331 Display eQTL plot
ENST00000466501 Hippocampus trans-eQTL Distance not available. 0.000000000202081 0.719229 Display eQTL plot
From Hippocampus trans-eQTL Distance not available. Pvalue: 0.000000000202081 Beta: 0.719229 Display eQTL plot
ENST00000295955 Orbitofrontal Cortex cis-eQTL 366 0.00000000445216 -1.13075 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 366 Pvalue: 0.00000000445216 Beta: -1.13075 Display eQTL plot
ENST00000508595 Orbitofrontal Cortex cis-eQTL 379 0.00000000000176067 -1.27963 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 379 Pvalue: 0.00000000000176067 Beta: -1.27963 Display eQTL plot
ENST00000506581 Orbitofrontal Cortex cis-eQTL 381 0.000000000304232 1.18847 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 381 Pvalue: 0.000000000304232 Beta: 1.18847 Display eQTL plot
ENST00000466501 Orbitofrontal Cortex trans-eQTL Distance not available. 0.0000000000117852 0.750502 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL Distance not available. Pvalue: 0.0000000000117852 Beta: 0.750502 Display eQTL plot
ENST00000295955 Prefrontal Cortex cis-eQTL 366 0.00000000000519383 -1.2662 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 366 Pvalue: 0.00000000000519383 Beta: -1.2662 Display eQTL plot
ENST00000506581 Prefrontal Cortex cis-eQTL 381 0.0000000102757 1.11546 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 381 Pvalue: 0.0000000102757 Beta: 1.11546 Display eQTL plot
ENST00000504470 Prefrontal Cortex cis-eQTL 866 0.0000000889862 -1.0601 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 866 Pvalue: 0.0000000889862 Beta: -1.0601 Display eQTL plot
ENST00000466501 Prefrontal Cortex trans-eQTL Distance not available. 0.00000000000675745 0.760486 Display eQTL plot
From Prefrontal Cortex trans-eQTL Distance not available. Pvalue: 0.00000000000675745 Beta: 0.760486 Display eQTL plot

This SNP has no significant association with any pathology marker.