Single nucleotide variant rs2260645

Genomic position: 4:

Allele info and frequencies

Click here to go to dbSNP for more information.

This SNP has no significant association with diseases nor in high LD with index SNPs.

Click here to find this SNP in GTEx database.

Gene Level

Click gene id to go to that gene. Cilck table header to sort by that attribute.

Gene ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENSG00000163682 Hippocampus cis-eQTL -22115 0.0000000610407 -1.13034 Display eQTL plot
From Hippocampus cis-eQTL Distance: -22115 Pvalue: 0.0000000610407 Beta: -1.13034 Display eQTL plot
ENSG00000237550 Orbitofrontal Cortex trans-eQTL Distance not available. 0.00000000428126 0.680203 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL Distance not available. Pvalue: 0.00000000428126 Beta: 0.680203 Display eQTL plot
ENSG00000163682 Prefrontal Cortex cis-eQTL -22115 0.0000000401093 -1.1457 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -22115 Pvalue: 0.0000000401093 Beta: -1.1457 Display eQTL plot
ENSG00000237550 Prefrontal Cortex trans-eQTL Distance not available. 0.0000000185775 0.663499 Display eQTL plot
From Prefrontal Cortex trans-eQTL Distance not available. Pvalue: 0.0000000185775 Beta: 0.663499 Display eQTL plot

Transcript Level

Click on transcript id to go to that transcript. Cilck table header to sort by that attribute.

Transcript ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENST00000295955 Cerebellum cis-eQTL -22116 0.000000209392 -1.09412 Display eQTL plot
From Cerebellum cis-eQTL Distance: -22116 Pvalue: 0.000000209392 Beta: -1.09412 Display eQTL plot
ENST00000506581 Cerebellum cis-eQTL -23383 0.0000000578868 1.13184 Display eQTL plot
From Cerebellum cis-eQTL Distance: -23383 Pvalue: 0.0000000578868 Beta: 1.13184 Display eQTL plot
ENST00000466501 Orbitofrontal Cortex trans-eQTL Distance not available. 0.0000000066511 0.674033 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL Distance not available. Pvalue: 0.0000000066511 Beta: 0.674033 Display eQTL plot

This SNP has no significant association with any pathology marker.