Single nucleotide variant rs28521730

Genomic position: 4:

Allele info and frequencies

Click here to go to dbSNP for more information.

This SNP has no significant association with diseases nor in high LD with index SNPs.

Click here to find this SNP in GTEx database.

Gene Level

Click gene id to go to that gene. Cilck table header to sort by that attribute.

Gene ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENSG00000163682 Cerebellum cis-eQTL 8083 0.0000000147081 1.17407 Display eQTL plot
From Cerebellum cis-eQTL Distance: 8083 Pvalue: 0.0000000147081 Beta: 1.17407 Display eQTL plot
ENSG00000163682 Hippocampus cis-eQTL 8083 0.000000130206 1.11315 Display eQTL plot
From Hippocampus cis-eQTL Distance: 8083 Pvalue: 0.000000130206 Beta: 1.11315 Display eQTL plot
ENSG00000163682 Orbitofrontal Cortex cis-eQTL 8083 0.00000000552229 1.1991 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 8083 Pvalue: 0.00000000552229 Beta: 1.1991 Display eQTL plot
ENSG00000237550 Orbitofrontal Cortex trans-eQTL Distance not available. 0.000000000879669 -0.701203 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL Distance not available. Pvalue: 0.000000000879669 Beta: -0.701203 Display eQTL plot
ENSG00000163682 Prefrontal Cortex cis-eQTL 8083 0.000000000238311 1.27378 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 8083 Pvalue: 0.000000000238311 Beta: 1.27378 Display eQTL plot
ENSG00000237550 Prefrontal Cortex trans-eQTL Distance not available. 0.0000000000873669 -0.733339 Display eQTL plot
From Prefrontal Cortex trans-eQTL Distance not available. Pvalue: 0.0000000000873669 Beta: -0.733339 Display eQTL plot

Transcript Level

Click on transcript id to go to that transcript. Cilck table header to sort by that attribute.

Transcript ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENST00000295955 Cerebellum cis-eQTL 9686 0.0000000000548434 1.30094 Display eQTL plot
From Cerebellum cis-eQTL Distance: 9686 Pvalue: 0.0000000000548434 Beta: 1.30094 Display eQTL plot
ENST00000506581 Cerebellum cis-eQTL 9701 0.000000145317 -1.10987 Display eQTL plot
From Cerebellum cis-eQTL Distance: 9701 Pvalue: 0.000000145317 Beta: -1.10987 Display eQTL plot
ENST00000466501 Cerebellum trans-eQTL Distance not available. 0.00000000547171 -0.676785 Display eQTL plot
From Cerebellum trans-eQTL Distance not available. Pvalue: 0.00000000547171 Beta: -0.676785 Display eQTL plot
ENST00000508595 Orbitofrontal Cortex cis-eQTL 9699 0.0000000000722478 1.2955 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 9699 Pvalue: 0.0000000000722478 Beta: 1.2955 Display eQTL plot
ENST00000506581 Orbitofrontal Cortex cis-eQTL 9701 0.00000000958157 -1.18519 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: 9701 Pvalue: 0.00000000958157 Beta: -1.18519 Display eQTL plot
ENST00000466501 Orbitofrontal Cortex trans-eQTL Distance not available. 0.000000000493302 -0.708455 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL Distance not available. Pvalue: 0.000000000493302 Beta: -0.708455 Display eQTL plot
ENST00000295955 Prefrontal Cortex cis-eQTL 9686 0.000000000848152 1.24626 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 9686 Pvalue: 0.000000000848152 Beta: 1.24626 Display eQTL plot
ENST00000506581 Prefrontal Cortex cis-eQTL 9701 0.0000000189291 -1.17054 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 9701 Pvalue: 0.0000000189291 Beta: -1.17054 Display eQTL plot
ENST00000466501 Prefrontal Cortex trans-eQTL Distance not available. 0.000000000124093 -0.72934 Display eQTL plot
From Prefrontal Cortex trans-eQTL Distance not available. Pvalue: 0.000000000124093 Beta: -0.72934 Display eQTL plot

This SNP has no significant association with any pathology marker.