Single nucleotide variant rs3788104

Genomic position: 21:

Allele info and frequencies

Click here to go to dbSNP for more information.

This SNP has no significant association with diseases nor in high LD with index SNPs.

Click here to find this SNP in GTEx database.

Gene Level

Click gene id to go to that gene. Cilck table header to sort by that attribute.

Gene ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENSG00000160221 Cerebellum cis-eQTL -41397 0.0000000198388 1.42586 Display eQTL plot
From Cerebellum cis-eQTL Distance: -41397 Pvalue: 0.0000000198388 Beta: 1.42586 Display eQTL plot
ENSG00000280071 Cerebellum trans-eQTL -38963788 0.00000000713759 -0.673031 Display eQTL plot
From Cerebellum trans-eQTL -38963788 Pvalue: 0.00000000713759 Beta: -0.673031 Display eQTL plot
ENSG00000275464 Cerebellum trans-eQTL -38937479 0.000000012953 -0.664411 Display eQTL plot
From Cerebellum trans-eQTL -38937479 Pvalue: 0.000000012953 Beta: -0.664411 Display eQTL plot
ENSG00000160218 Hippocampus cis-eQTL 0 0.0000000374286 1.40478 Display eQTL plot
From Hippocampus cis-eQTL Distance: 0 Pvalue: 0.0000000374286 Beta: 1.40478 Display eQTL plot
ENSG00000160221 Hippocampus cis-eQTL -41397 0.00000000761895 1.45627 Display eQTL plot
From Hippocampus cis-eQTL Distance: -41397 Pvalue: 0.00000000761895 Beta: 1.45627 Display eQTL plot
ENSG00000280071 Hippocampus trans-eQTL -38963788 0.00000000847759 -0.670571 Display eQTL plot
From Hippocampus trans-eQTL -38963788 Pvalue: 0.00000000847759 Beta: -0.670571 Display eQTL plot
ENSG00000275464 Hippocampus trans-eQTL -38937479 0.00000000647455 -0.674414 Display eQTL plot
From Hippocampus trans-eQTL -38937479 Pvalue: 0.00000000647455 Beta: -0.674414 Display eQTL plot
ENSG00000241945 Orbitofrontal Cortex cis-eQTL -15160 0.0000000150087 1.46991 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: -15160 Pvalue: 0.0000000150087 Beta: 1.46991 Display eQTL plot
ENSG00000160221 Orbitofrontal Cortex cis-eQTL -41397 0.0000000160022 1.4678 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: -41397 Pvalue: 0.0000000160022 Beta: 1.4678 Display eQTL plot
ENSG00000280071 Orbitofrontal Cortex trans-eQTL -38963788 0.00000000070692 -0.70397 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL -38963788 Pvalue: 0.00000000070692 Beta: -0.70397 Display eQTL plot
ENSG00000275464 Orbitofrontal Cortex trans-eQTL -38937479 0.00000000291868 -0.68545 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL -38937479 Pvalue: 0.00000000291868 Beta: -0.68545 Display eQTL plot
ENSG00000160218 Prefrontal Cortex cis-eQTL 0 0.0000000914809 1.37398 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 0 Pvalue: 0.0000000914809 Beta: 1.37398 Display eQTL plot
ENSG00000160221 Prefrontal Cortex cis-eQTL -41397 0.0000000744608 1.38123 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -41397 Pvalue: 0.0000000744608 Beta: 1.38123 Display eQTL plot
ENSG00000280071 Prefrontal Cortex trans-eQTL -38963788 0.0000000176103 -0.6643 Display eQTL plot
From Prefrontal Cortex trans-eQTL -38963788 Pvalue: 0.0000000176103 Beta: -0.6643 Display eQTL plot
ENSG00000275464 Prefrontal Cortex trans-eQTL -38937479 0.00000000816518 -0.675563 Display eQTL plot
From Prefrontal Cortex trans-eQTL -38937479 Pvalue: 0.00000000816518 Beta: -0.675563 Display eQTL plot

Transcript Level

Click on transcript id to go to that transcript. Cilck table header to sort by that attribute.

Transcript ID Discovered on cis/trans Distance p-value Regression coefficient eQTL plot More
ENST00000291574 Cerebellum cis-eQTL 0 0.0000000443424 1.39902 Display eQTL plot
From Cerebellum cis-eQTL Distance: 0 Pvalue: 0.0000000443424 Beta: 1.39902 Display eQTL plot
ENST00000291576 Cerebellum cis-eQTL -15186 0.0000000894662 1.37455 Display eQTL plot
From Cerebellum cis-eQTL Distance: -15186 Pvalue: 0.0000000894662 Beta: 1.37455 Display eQTL plot
ENST00000427803 Cerebellum cis-eQTL -41405 0.0000000318826 1.41018 Display eQTL plot
From Cerebellum cis-eQTL Distance: -41405 Pvalue: 0.0000000318826 Beta: 1.41018 Display eQTL plot
ENST00000291577 Cerebellum cis-eQTL -41470 0.0000000444698 1.39892 Display eQTL plot
From Cerebellum cis-eQTL Distance: -41470 Pvalue: 0.0000000444698 Beta: 1.39892 Display eQTL plot
ENST00000617716 Cerebellum trans-eQTL -38937479 0.00000000413914 -0.68067 Display eQTL plot
From Cerebellum trans-eQTL -38937479 Pvalue: 0.00000000413914 Beta: -0.68067 Display eQTL plot
ENST00000291577 Hippocampus cis-eQTL -41470 0.000000000196249 1.55913 Display eQTL plot
From Hippocampus cis-eQTL Distance: -41470 Pvalue: 0.000000000196249 Beta: 1.55913 Display eQTL plot
ENST00000620528 Hippocampus trans-eQTL -38963788 0.00000000704639 -0.673214 Display eQTL plot
From Hippocampus trans-eQTL -38963788 Pvalue: 0.00000000704639 Beta: -0.673214 Display eQTL plot
ENST00000617716 Hippocampus trans-eQTL -38937479 0.00000000573583 -0.676123 Display eQTL plot
From Hippocampus trans-eQTL -38937479 Pvalue: 0.00000000573583 Beta: -0.676123 Display eQTL plot
ENST00000291576 Orbitofrontal Cortex cis-eQTL -15186 0.00000000269266 1.52386 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: -15186 Pvalue: 0.00000000269266 Beta: 1.52386 Display eQTL plot
ENST00000493883 Orbitofrontal Cortex cis-eQTL -41426 0.0000000128738 1.47494 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: -41426 Pvalue: 0.0000000128738 Beta: 1.47494 Display eQTL plot
ENST00000291577 Orbitofrontal Cortex cis-eQTL -41470 0.00000000261983 1.52468 Display eQTL plot
From Orbitofrontal Cortex cis-eQTL Distance: -41470 Pvalue: 0.00000000261983 Beta: 1.52468 Display eQTL plot
ENST00000620528 Orbitofrontal Cortex trans-eQTL -38963788 0.00000000239929 -0.688093 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL -38963788 Pvalue: 0.00000000239929 Beta: -0.688093 Display eQTL plot
ENST00000617716 Orbitofrontal Cortex trans-eQTL -38937479 0.00000000399963 -0.681143 Display eQTL plot
From Orbitofrontal Cortex trans-eQTL -38937479 Pvalue: 0.00000000399963 Beta: -0.681143 Display eQTL plot
ENST00000291574 Prefrontal Cortex cis-eQTL 0 0.0000000108016 1.4452 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 0 Pvalue: 0.0000000108016 Beta: 1.4452 Display eQTL plot
ENST00000422875 Prefrontal Cortex cis-eQTL 0 0.00000000941105 -1.4495 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: 0 Pvalue: 0.00000000941105 Beta: -1.4495 Display eQTL plot
ENST00000291576 Prefrontal Cortex cis-eQTL -15186 0.0000000218612 1.42265 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -15186 Pvalue: 0.0000000218612 Beta: 1.42265 Display eQTL plot
ENST00000291577 Prefrontal Cortex cis-eQTL -41470 0.000000000866209 1.51909 Display eQTL plot
From Prefrontal Cortex cis-eQTL Distance: -41470 Pvalue: 0.000000000866209 Beta: 1.51909 Display eQTL plot
ENST00000620528 Prefrontal Cortex trans-eQTL -38963788 0.00000000545141 -0.681293 Display eQTL plot
From Prefrontal Cortex trans-eQTL -38963788 Pvalue: 0.00000000545141 Beta: -0.681293 Display eQTL plot
ENST00000617716 Prefrontal Cortex trans-eQTL -38937479 0.000000000825216 -0.706468 Display eQTL plot
From Prefrontal Cortex trans-eQTL -38937479 Pvalue: 0.000000000825216 Beta: -0.706468 Display eQTL plot

This SNP has no significant association with any pathology marker.